DRSN

workflowr

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• Checks
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Last updated: 2025-04-14

Checks: 2 0

Knit directory: analysis-user-group/

This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

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R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 5628c6d

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 5628c6d. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    analysis/.DS_Store
    Ignored:    analysis/.Rhistory
    Ignored:    analysis/adit/.DS_Store

Untracked files:
    Untracked:  analysis/adit/head_index.html

Unstaged changes:
    Modified:   workflow.R

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

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These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	5628c6d	DrThomasOneil	2025-04-14	wflow_publish("analysis/*.Rmd")
html	ed690e6	DrThomasOneil	2025-04-14	Build site.
html	cb886ef	DrThomasOneil	2025-04-10	Build site.
html	f6c0433	YuchenLi	2025-04-09	Build site.
html	8d78b0f	YuchenLi	2025-04-09	Build site.
html	7421f69	DrThomasOneil	2025-04-08	Build site.
html	8d1c50e	DrThomasOneil	2025-03-24	Build site.
html	fac899b	DrThomasOneil	2025-03-24	Build site.
Rmd	382e7d8	DrThomasOneil	2025-03-24	wflow_publish("analysis/index.Rmd")
html	c649a01	DrThomasOneil	2025-03-24	Build site.
Rmd	7068513	DrThomasOneil	2025-03-24	wflow_publish("analysis/index.Rmd")
html	517dcf9	DrThomasOneil	2025-03-24	Build site.
html	6a4432b	DrThomasOneil	2025-03-24	Build site.
html	1f218f3	DrThomasOneil	2025-03-24	Build site.
Rmd	b9fafb0	DrThomasOneil	2025-03-24	wflow_publish("analysis/*.Rmd")
html	dca90e9	DrThomasOneil	2025-03-24	Build site.
html	1d1c076	DrThomasOneil	2025-03-24	Build site.
html	956ba9b	DrThomasOneil	2025-03-24	Build site.
Rmd	6b72e34	DrThomasOneil	2025-03-24	wflow_publish(c("analysis/*.Rmd"))
html	f6ce3f3	DrThomasOneil	2025-03-20	Build site.
Rmd	e6b9862	DrThomasOneil	2025-03-20	wflow_publish(c("analysis/index.Rmd"))
html	d600337	DrThomasOneil	2025-03-18	Build site.
html	b537f69	DrThomasOneil	2025-03-18	Build site.
Rmd	16ba857	DrThomasOneil	2025-03-16	upd
html	b7982e9	DrThomasOneil	2025-03-16	Build site.
html	fc5dd81	DrThomasOneil	2025-03-16	Build site.
Rmd	b50c80e	DrThomasOneil	2025-03-16	wflow_publish(c("analysis/*.Rmd"))
html	8e1c1a3	DrThomasOneil	2025-03-16	Build site.
html	36dc5fc	DrThomasOneil	2025-03-03	Build site.
html	49bb28c	DrThomasOneil	2025-03-03	Build site.
html	8258922	DrThomasOneil	2025-03-03	Build site.
html	71646a5	DrThomasOneil	2025-02-27	Build site.
Rmd	c05aafe	DrThomasOneil	2025-02-27	wflow_publish(c("analysis/*.Rmd"))
html	c7f5738	DrThomasOneil	2025-02-24	Build site.
Rmd	41492b9	DrThomasOneil	2025-02-24	wflow_publish(c("analysis/*.Rmd"))
html	79d09b1	DrThomasOneil	2025-02-24	Build site.
html	a5c9f2c	DrThomasOneil	2025-02-24	Build site.
html	ca2c086	DrThomasOneil	2025-02-24	Build site.
html	fca0503	DrThomasOneil	2025-02-24	Build site.
html	af42fba	DrThomasOneil	2025-02-24	Build site.
html	1aeefc7	DrThomasOneil	2025-02-20	Build site.
Rmd	756ebac	DrThomasOneil	2025-02-20	wflow_publish(c("analysis/*.Rmd"))
html	5fe30de	DrThomasOneil	2025-02-20	Build site.
html	5ef4f12	DrThomasOneil	2025-02-11	Build site.
html	f48f4f0	DrThomasOneil	2025-02-10	Build site.
html	3bfe847	DrThomasOneil	2025-02-10	Build site.
html	b14f3b5	DrThomasOneil	2025-02-10	Build site.
html	bfba3e0	DrThomasOneil	2025-02-07	Build site.
html	f3d6f87	DrThomasOneil	2025-02-04	Build site.
html	f654b8d	DrThomasOneil	2025-02-04	Build site.
Rmd	e6ea78d	DrThomasOneil	2025-02-04	wflow_publish(c("analysis/*.Rmd"))
html	4968925	DrThomasOneil	2025-01-30	Build site.
Rmd	afccf59	DrThomasOneil	2025-01-30	wflow_publish(c("analysis/*.Rmd"))
html	299ff3d	DrThomasOneil	2025-01-28	Build site.
Rmd	272b312	DrThomasOneil	2025-01-28	wflow_publish(c("analysis/*"))
html	023005d	DrThomasOneil	2025-01-07	Build site.
Rmd	0ecb65d	DrThomasOneil	2025-01-07	Updated Getting Started in R. Chapter 1 completed
html	c893d70	DrThomasOneil	2025-01-06	Build site.
html	660b0f8	DrThomasOneil	2025-01-06	Build site.
Rmd	7cb1531	DrThomasOneil	2025-01-06	Initial Deployment
html	2e79a1d	DrThomasOneil	2025-01-06	Build site.
Rmd	451a21f	DrThomasOneil	2025-01-06	Initial Deployment
Rmd	f4d6dba	DrThomasOneil	2025-01-04	r-tutorials
Rmd	2eeb8dc	DrThomasOneil	2024-12-26	first draft
html	2eeb8dc	DrThomasOneil	2024-12-26	first draft
Rmd	b381b5b	DrThomasOneil	2024-12-26	Start workflowr project.

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Digital Research Skills Network

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Welcome

Welcome to the Workshop site for the Digital Research Skills Network! Whether you’re just starting out with R or looking to strengthen your skills, this site is designed to foster a digital community centered around biomedical research programmatic analysis.

Here, you’ll find:

• Workshop schedules and announcements.
• Step-by-step instructions for workshop activities.
• Additional resources that might be of interest.

Workshop material will aim to use publicly available data or mock created data. Therefore, you will not need to rely on uploaded data from the demonstrators/creators. Instead, a pre-workshop set-ups will include instructions for where to download and prep relevant data.

Bookmark this site for quick access to scripts and updates as workshops progress.

Using this site

This site is organised into several sections to help you quickly find what you need:

• Getting Started in R: A beginner-friendly guide to help you set up R and RStudio, along with key concepts and tips for coding.
• Announcements: Updates on upcoming workshops, deadlines, and important notices.
• Workshops: Detailed instructions, scripts, and examples for each workshop session.
• Extra Resources: Links to helpful tutorials, data sets, and cheat sheets.
• Contacts: Acknowledge who contributed to these workshops! :)

We are also always looking for feedback. Please reach out to myself or others.

You’ll also see graphics like this throughout that emphasis

Important information

Success

Warnings

Dangers

Goals to achieve in a session or workshop

Practice before moving on

Important Terminology

Special Thanks

There are a lot of extra people to thank for contributing, motivating and helping build this digital community and repository:

• Oscar Dong
• Yuchen Li
• Elizabeth Dunn
• Erin Coll
• Heeva Baharlou
• Farhan Ameen 🌟

This site was made with WorkflowR by Blischak JD, et al. 2019

Digital Research Skills Network
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